SIV infection of two natural host species, sooty mangabeys
and African green monkeys (AGMs), is rarely pathogenic. A trio of newly
published studies evaluate the changes in gene expression that result from SIV
infection in these animals compared to rhesus macaques, in which SIV typically
causes T cell loss and simian AIDS. A novel feature of the research is that
gene expression is analyzed from very early time points (~3 days onwards) in
order to capture any transient changes during acute infection. All three
studies report the same key finding: sooty mangabeys and AGMs initially mount
an immune response to SIV that is accompanied by massive changes in gene
expression, but these changes largely resolve after acute infection. In
contrast, altered gene expression – particularly involving genes related to
immune activation - persists in pathogenic SIV infection of rhesus macaques. These
new papers refute a prior theory that SIV is generally non-pathogenic in sooty
mangabeys and AGMs because their immune systems essentially ignore the virus.
The studies place a particular focus on genes related to the
production of type 1 interferons and interferon-stimulated genes (ISGs) due to a previous report suggesting that sooty mangabey dendritic cells fail to
produce interferon after exposure to SIV. The gene expression data clearly show
that interferons and ISGs are massively but transiently upregulated during
acute SIV infection in both sooty mangabeys and AGMs. In rhesus macaques, there
is also a massive increase in expression of interferon genes and ISGs during
acute SIV infection and these genes remain persistently upregulated into the
chronic phase.
The research team led by Steven Bosinger also analyzes
differences between sooty mangabeys and rhesus macaques by grouping genes
together into seven broad categories: cell-mediated immune response, humoral
immune response, inflammatory response, immune cell trafficking, cell death,
cell cycle and hematopoiesis (click on the image to the left to see detail). The striking contrast that emerges from this
analysis is that genes involved in cell mediated, humoral and inflammatory
immune responses are more strongly upregulated at day 10 after infection in
sooty mangabeys compared to rhesus macaques, but by day 180 this difference is
reversed. Cell cycle gene upregulation also disappears by day 180 in sooty
mangabeys but remains significantly upregulated in rhesus macques, consistent
with pathogenic SIV infection causing increased T cell turnover. In both sooty
mangabeys and AGMs, the rapid curtailment of immune activation after acute
infection is associated with the upregulation of genes known to be involved in
downmodulating immune responses.
The overall picture conveyed by the data is that sooty
mangabeys and AGMs make a potent innate and adaptive immune response against
SIV immediately after infection, but this immune response resolves (despite the
fact that relatively high levels of SIV replication persist in the chronic
phase). In contrast, rhesus macaques make a weaker initial response and
continue to mount responses throughout the course of infection. A systems
biology analysis by Bosinger and colleagues identifies the T cell exhaustion
marker LAG3 as being a strong correlate of persistent immune activation in
macaques, perhaps suggesting that T cell dysfunction plays an important role in
the unresolved immune response against SIV in these animals.
J. Clin. Invest.
doi:10.1172/JCI40115.
Global genomic analysis reveals rapid control of a robust
innate response in SIV-infected sooty mangabeys (free access to full text)
Steven E. Bosinger1,2, Qingsheng Li3, Shari N. Gordon1,
Nichole R. Klatt1, Lijie Duan3, Luoling Xu2, Nicholas Francella1, Abubaker
Sidahmed2, Anthony J. Smith3, Elizabeth M. Cramer1, Ming Zeng3, David
Masopust3, John V. Carlis4, Longsi Ran2, Thomas H. Vanderford1, Mirko
Paiardini1, R. Benjamin Isett5, Don A. Baldwin1,5, James G. Else6, Silvija I.
Staprans7, Guido Silvestri1,6, Ashley T. Haase3 and David J. Kelvin2,8
1 Department of Pathology and Laboratory Medicine, and
Microbiology, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania,
USA. 2 Division of Experimental Therapeutics, University Health
Network, Toronto, Ontario, Canada. 3 Department of Microbiology, Medical School, University of
Minnesota, Minneapolis, Minnesota, USA. 4 Department of Computer Science and Engineering, Institute
of Technology, University of Minnesota, Minneapolis, Minnesota, USA. 5 Penn Microarray Facility, University of Pennsylvania School
of Medicine, Philadelphia, Pennsylvania, USA. 6 Yerkes National Primate Research Center, Emory University,
Atlanta, Georgia, USA. 7 Merck Vaccines and Infectious Diseases, Merck and Co., West
Point, Pennsylvania, USA. 8 Division of Immunology, International Institute of
Infection and Immunity, Shantou University Medical College, Shantou, Guangdong,
People’s Republic of China.
Authorship note: Steven E. Bosinger and Qingsheng Li, as
well as Guido Silvestri, Ashley T. Haase, and David J. Kelvin, contributed
equally to this work.
Natural SIV infection of sooty mangabeys (SMs) is
nonprogressive despite chronic virus replication. Strikingly, it is
characterized by low levels of immune activation, while pathogenic SIV
infection of rhesus macaques (RMs) is associated with chronic immune
activation. To elucidate the mechanisms underlying this intriguing phenotype,
we used high-density oligonucleotide microarrays to longitudinally assess host
gene expression in SIV-infected SMs and RMs. We found that acute SIV infection
of SMs was consistently associated with a robust innate immune response,
including widespread upregulation of IFN-stimulated genes (ISGs) in blood and
lymph nodes. While SMs exhibited a rapid resolution of ISG expression and
immune activation, both responses were observed chronically in RMs. Systems
biology analysis indicated that expression of the lymphocyte inhibitory
receptor LAG3, a marker of T cell exhaustion, correlated with immune activation
in SIV-infected RMs but not SMs. Our findings suggest that active immune
regulatory mechanisms, rather than intrinsically attenuated innate immune
responses, underlie the low levels of immune activation characteristic of SMs
chronically infected with SIV.
J. Clin. Invest.
doi:10.1172/JCI40093.
Nonpathogenic SIV infection of African green monkeys induces
a strong but rapidly controlled type I IFN response (free access to full text)
Béatrice Jacquelin1, Véronique Mayau1, Brice Targat2,
Anne-Sophie Liovat1, Désirée Kunkel1, Gaël Petitjean1, Marie-Agnès Dillies3,
Pierre Roques4, Cécile Butor5, Guido Silvestri6, Luis D. Giavedoni7, Pierre
Lebon8, Françoise Barré-Sinoussi1, Arndt Benecke2,9 and Michaela C.
Müller-Trutwin1
1 Institut Pasteur, Unité de Régulation des Infections
Rétrovirales, Paris, France. 2 Institut des Hautes ωtudes Scientifiques, Bures-sur-Yvette,
France. 3 Institut Pasteur, Plateforme 2, Paris, France. 4 CEA, Division of Immuno-Virology, DSV/iMETI,
Fontenay-aux-Roses, and Université Paris-Sud 11, UMR E01, Orsay, France. 5 Laboratoire d’Immunologie Humaine, INSERM U743, and
Université Paris Diderot, Paris, France. 6 Department of Pathology and Laboratory Medicine, University
of Pennsylvania, Philadelphia, Pennsylvania, USA. 7 Southwest National Primate Research Center, Southwest
Foundation for Biomedical Research, San Antonio, Texas, USA. 8 Hôpital Saint-Vincent de Paul and Université Paris
Descartes, Laboratoire de Virologie, Paris, France. 9 Institut de Recherche Interdisciplinaire, CNRS USR3078,
Lille, France.
African green monkeys (AGMs) infected with the AGM type of
SIV (SIVagm) do not develop chronic immune activation and AIDS, despite viral
loads similar to those detected in humans infected with HIV-1 and rhesus
macaques (RMs) infected with the RM type of SIV (SIVmac). Because chronic immune
activation drives progressive CD4+ T cell depletion and immune cell
dysfunctions, factors that characterize disease progression, we sought to
understand the molecular basis of this AGM phenotype. To this end, we
longitudinally assessed the gene expression profiles of blood- and lymph
node–derived CD4+ cells from AGMs and RMs in response to SIVagm and SIVmac
infection, respectively, using a genomic microarray platform. The molecular
signature of acute infection was characterized, in both species, by strong upregulation
of type I IFN–stimulated genes (ISGs). ISG expression returned to basal levels
after postinfection day 28 in AGMs but was sustained in RMs, especially in the
lymph node–derived cells. We also found that SIVagm induced IFN-α production by
AGM cells in vitro and that low IFN-α levels were sufficient to induce strong
ISG responses. In conclusion, SIV infection triggered a rapid and strong IFN-α response
in vivo in both AGMs and RMs, with this response being efficiently controlled
only in AGMs, possibly as a result of active regulatory mechanisms.
J. Clin. Invest.
doi:10.1172/JCI41509.
Commentary
Resolution of immune activation defines nonpathogenic SIV
infection
Olivier Manches, Nina Bhardwaj
Natural nonhuman primate hosts of SIV do not succumb to AIDS
despite significant viral replication, a phenomenon attributed to reduced
levels of chronic and deleterious “immune activation.” Two studies in this
issue of the JCI, by Bosinger et al. and Jacquelin et al., now show that SIV
induces vigorous immune activation and upregulation of IFN-stimulated genes in
both natural and susceptible hosts, but strikingly, the responses resolve only
in the former (see the related articles, doi:10.1172/JCI40115 and
10.1172/JCI40093, respectively). Thus, natural hosts for SIV actively engage
mechanisms to abort sustained immune activation and its associated harmful
effects.
JVI Accepts, published online ahead of print on 25 November
2009
J. Virol. doi:10.1128/JVI.01496-09
Non pathogenesis of SIV infection is associated with reduced
inflammation and recruitment of plasmacytoid dendritic cells to lymph nodes,
not to lack of an interferon type I response, during the acute phase.
Laure Campillo-Gimenez, Mireille Laforge, Michèle Fay,
Audrey Brussel, Marie-Christine Cumont, Valérie Monceaux, Ousmane Diop, Yves
Lévy, Bruno Hurtrel, John Zaunders, Jacques Corbeil, Carole Elbim, and Jérôme
Estaquier
INSERM U955, Faculté Créteil Henri Mondor, Créteil, F-94000,
France; Université Paris 7 Denis Diderot, Faculté de Médecine, site Bichat,
Paris, F-75018, France; Unité de Physiopathologie des Infections Lentivirales,
Institut Pasteur, 28 rue du Docteur Roux, Paris, F-75015, France; Institut
Pasteur, Dakar, Sénégal; Centre for Applied Medical Research, St Vincent's
Hospital, Darlinghurst, NSW, Australia; Université Laval, Centre de Recherche
en Infectiologie, G1V 4G2 Québec, Canada; Centre de Recherche des Cordeliers,
Université Pierre et Marie Curie – Paris 6, UMR S 872, Paris, F-75006 France;
Université Paris Descartes, UMR S 872, Paris, F-75006 France; INSERM, U872,
Paris, F-75006,France; Assistance Publique-Hôpitaux de Paris, Hôpital Henri
Mondor, Créteil, France
Abstract
Divergent Toll-like receptor (TLR)-7 and TLR-9 signaling has
been proposed to distinguish pathogenic from non pathogenic SIV infection in
primate models. Herein, we demonstrate that increased expression of type I IFN
in pathogenic rhesus macaques as compared to non pathogenic African green
monkeys was associated with the recruitment of plasmacytoid dendritic cells
(pDCs) in the lymph nodes and the presence of an inflammatory environment early
after infection, instead of a difference in TLR-7/9 response.
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